Papers by Tao Yuan
Dolphin: Moving Towards Closed-loop Auto-research through Thinking, Practice, and Feedback (2025.acl-long)
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Jiakang Yuan, Xiangchao Yan, Bo Zhang, Tao Chen, Botian Shi, Wanli Ouyang, Yu Qiao, Lei Bai, Bowen Zhou
| Challenge: | Recent studies show that AI-assisted research methods can improve research efficiency . a closed-loop framework is used to enhance the automation level of scientific research . |
| Approach: | They propose a closed-loop LLM-driven framework to enhance the automation level of scientific research. |
| Outcome: | The proposed framework improves the efficiency of scientific research by improving data analysis, accelerating computation, and fostering novel idea generation. |
MemoPhishAgent: Memory-Augmented Multi-Modal LLM Agent for Phishing URL Detection (2026.acl-industry)
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| Challenge: | Traditional phishing website detection relies on static heuristics or reference lists, which lag behind rapidly evolving attacks. |
| Approach: | They propose a memory-augmented multi-modal LLM agent that leverages episodic memories to guide decisions on recurring and novel threats. |
| Outcome: | The proposed agent outperforms state-of-the-art phishing detection tools on two public datasets and improves recall by 20%. |
Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models (2025.findings-emnlp)
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Haonan He, Yuchen Ren, Yining Tang, Ziyang Xu, Junxian Li, Minghao Yang, Di Zhang, Yuan Dong, Tao Chen, Shufei Zhang, Yuqiang Li, Nanqing Dong, Wanli Ouyang, Dongzhan Zhou, Peng Ye
| Challenge: | Biology-Instructions is the first large-scale instruction-tuning dataset for multi-omics biological sequences. |
| Approach: | They propose a large-scale instruction-tuning dataset for multi-omics biological sequences . they propose 'chatMultiOmics' to overcome limitations of current LLMs on multi-ome tasks . |
| Outcome: | The proposed dataset bridges LLMs and complex biological sequence-related tasks while maintaining conversational fluency. |
RIFT: Repurposing Negative Samples via Reward-Informed Fine-Tuning (2026.findings-acl)
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| Challenge: | Reward Informed Fine-Tuning (RIFT) is an effective and robust alternative to expensive expert data for LLM alignment. |
| Approach: | They propose a reward-informed fine-tuning framework that utilizes all self-generated samples to learn from both positive and negative trajectories. |
| Outcome: | The proposed framework outperforms both RFT and Supervised Fine-Tuning (SFT) on mathematical benchmarks. |
Incentivizing Strong Reasoning from Weak Supervision (2026.eacl-long)
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| Challenge: | Large language models (LLMs) have demonstrated impressive performance on reasoning-intensive tasks, but enhancing their reasoning abilities typically relies on expensive high-quality demonstrations and reinforcement learning. |
| Approach: | They propose to incentivize reasoning abilities of large language models without expensive demonstrations and reinforcement learning. |
| Outcome: | The proposed model can recover 94% of the gains of expensive RL at a fraction of the cost. |
Locate, Steer, and Improve: A Practical Survey of Actionable Mechanistic Interpretability in Large Language Models (2026.findings-acl)
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Hengyuan Zhang, Zhihao Zhang, Ercong Nie, Mingyang Wang, Zunhai Su, Yiwei Wang, Qianli Wang, Shuzhou Yuan, Xufeng Duan, Qibo Xue, Zeping Yu, Chenming Shang, Xiao Liang, Jing Xiong, Hui Shen, Chaofan Tao, Zhengwu Liu, Senjie Jin, Zhiheng Xi, Dongdong Zhang, Sophia Ananiadou, Tao Gui, Ruobing Xie, Hayden Kwok-Hay So, Hinrich Schuetze, Xuanjing Huang, Qi Zhang, Ngai Wong
| Challenge: | Existing literature on mechanistic interpretation (MI) treats it as an observational science, leaving practical applications underexplored. |
| Approach: | They propose a survey structured around the pipeline to identify and improve MI models. |
| Outcome: | The proposed framework enables tangible improvements in Alignment, Capability, and Efficiency. |
Evaluating Fairness in Large Vision-Language Models Across Diverse Demographic Attributes and Prompts (2025.findings-emnlp)
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| Challenge: | Large vision-language models have demonstrated strong capabilities in open-world visual understanding, but it is not clear how they address demographic biases in real life. |
| Approach: | They propose a method to assess visual fairness in LVLMs by question-answering/classification tasks. |
| Outcome: | The proposed approach improves transparency and offers a scalable solution for fairness mitigation. |
MinerU2.5: A Decoupled Vision-Language Model for Efficient High-Resolution Document Parsing (2026.acl-industry)
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Junbo Niu, Zheng Liu, Zhuangcheng Gu, Bin Wang, Linke Ouyang, Zhiyuan Zhao, Tao Chu, Tianyao He, Fan Wu, Qintong Zhang, Zhenjiang Jin, Guang Liang, Rui Zhang, Wenzheng Zhang, Yuan Qu, Zhifei Ren, Yuefeng Sun, Zirui Tang, Boyu Niu, Yuanhong Zheng, Dongsheng Ma, Ziyang Miao, Hejun Dong, Siyi Qian, Junyuan Zhang, Fangdong Wang, Jingzhou Chen, Xiaomeng Zhao, Liqun Wei, Wei Li, Shasha Wang, RuiLiang Xu, Yuanyuan Cao, Lu Chen, Qianqian Wu, Huaiyu Gu, Lindong Lu, Dechen Lin, null Shenguanlin, Xuanhe Zhou, Linfeng Zhang, Yuhang Zang, Xiaoyi Dong, Jiaqi Wang, Bo Zhang, Lei Bai, Pei Chu, Weijia Li, Jiang Wu, Lijun Wu, Zhenxiang Li, Guangyu Wang, Zhongying Tu, Chao Xu, Kai Chen, Bowen Zhou, Dahua Lin, Wentao Zhang, Conghui He
| Challenge: | Document images are characterized by higher resolutions, denser content, and more complex structural layouts. |
| Approach: | They propose a 1.2B-parameter document parsing vision-language model that decouples layout analysis from local content recognition. |
| Outcome: | The proposed model surpasses general-purpose and domain-specific models on multiple benchmarks while maintaining significantly lower computational overhead. |
AnyGPT: Unified Multimodal LLM with Discrete Sequence Modeling (2024.acl-long)
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Jun Zhan, Junqi Dai, Jiasheng Ye, Yunhua Zhou, Dong Zhang, Zhigeng Liu, Xin Zhang, Ruibin Yuan, Ge Zhang, Linyang Li, Hang Yan, Jie Fu, Tao Gui, Tianxiang Sun, Yu-Gang Jiang, Xipeng Qiu
| Challenge: | Existing language models that use discrete representations for unified processing of various modalities are limited to text generation and do not include multimodal output. |
| Approach: | They propose a multimodal language model that utilizes discrete representations for unified processing of various modalities. |
| Outcome: | The proposed model can be trained stably without any alterations to existing models or training paradigms. |
Cognitive-Level Adaptive Generation via Capability-Aware Retrieval and Style Adaptation (2025.findings-emnlp)
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| Challenge: | Large Language Models struggle to adapt content to users with differing cognitive capacities, leading to cognitive misalignment. |
| Approach: | They propose a cognitive-level alignment framework that aligns both knowledge complexity and presentation style with user cognition. |
| Outcome: | The proposed framework aligns knowledge complexity and presentation style with user cognition. |
Chain-of-Thought Prompting Obscures Hallucination Cues in Large Language Models: An Empirical Evaluation (2025.findings-emnlp)
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| Challenge: | Chain-of-Thought (CoT) prompting can mitigate hallucinations by encouraging step-by-step reasoning, but its impact on halluciation detection remains underexplored. |
| Approach: | They conduct an empirical evaluation of CoT prompting in Large Language Models (LLMs) to examine their impact on hallucination detection methods. |
| Outcome: | The proposed method significantly affects the internal states and token probability distributions of the LLM. |
DP3: Differentially Private Prompt Perturbation for Multi-turn LLM Inference (2026.findings-acl)
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| Challenge: | Large language models (LLMs) are widely used for text understanding and generation . existing methods that assume single-turn interactions break down in multi-turn settings . |
| Approach: | They propose a differentially private prompt perturbation framework for multi-turn LLM inference . DP3 constructs a perturbation mapping table to reuse perturbations for recurring tokens . |
| Outcome: | The proposed framework reduces privacy costs and degrades cross-turn semantic coherence . it also provides a context-aware utility function to maintain semantic consistency across turns . |
Enhancing Input-Label Mapping in In-Context Learning with Contrastive Decoding (2025.acl-short)
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| Challenge: | Prior research has found that large language models overlook input-label mapping information in ICL, relying more on their pre-trained knowledge. |
| Approach: | They propose a novel method that contrasts input-label mappings between positive and negative in-context examples to improve model performance. |
| Outcome: | The proposed method improves performance on 7 natural language understanding tasks without additional training. |
Clustering and Ranking: Diversity-preserved Instruction Selection through Expert-aligned Quality Estimation (2024.emnlp-main)
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Yuan Ge, Yilun Liu, Chi Hu, Weibin Meng, Shimin Tao, Xiaofeng Zhao, Mahong Xia, Zhang Li, Boxing Chen, Hao Yang, Bei Li, Tong Xiao, JingBo Zhu
| Challenge: | Existing methods for instruction data selection have limitations such as relying on fragile external APIs, being affected by biases in GPT models, or reducing the diversity of the selected instruction dataset. |
| Approach: | They propose an industrial-friendly, expert-aligned and diversity-preserved instruction data selection method: Clustering and Ranking (CaR). |
| Outcome: | The proposed method outperforms Alpaca's existing methods by 32.1% in GPT-4 evaluations. |
LoRE-Merging: Exploring Low-Rank Estimation For Large Language Model Merging (2025.findings-emnlp)
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| Challenge: | a framework for model merging is proposed without additional training . task vectors from fine-tuned models exhibit a limited number of dominant singular values . |
| Approach: | They propose a framework for model merging based on low-rank estimation of task vectors without access to the base model. |
| Outcome: | The proposed framework improves models without additional training without additional inputs. |
InfiMM: Advancing Multimodal Understanding with an Open-Sourced Visual Language Model (2024.findings-acl)
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Haogeng Liu, Quanzeng You, Yiqi Wang, Xiaotian Han, Bohan Zhai, Yongfei Liu, Wentao Chen, Yiren Jian, Yunzhe Tao, Jianbo Yuan, Ran He, Hongxia Yang
| Challenge: | InfiMM is a multimodal large language model that adapts to complex vision-language tasks. |
| Approach: | They present a Multimodal Large Language Model that adapts to intricate vision-language tasks using large-scale training data and comprehensive training strategies. |
| Outcome: | Empirical evaluations across a variety of benchmarks underscore InfiMM’s remarkable capability in multimodal understanding. |
Structured Attention for Unsupervised Dialogue Structure Induction (2020.emnlp-main)
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| Challenge: | Using structured attention, a model can learn dialogue structure in unsupervised fashion. |
| Approach: | They propose to incorporate structured attention layers into a Variational Recurrent Neural Network model with discrete latent states to learn dialogue structure in an unsupervised fashion. |
| Outcome: | The proposed model learns semantic structures similar to templates used to generate a dialogue corpus on two-party datasets and on multi-party dialogues, disentangling dialogues without human annotation. |
ChatMusician: Understanding and Generating Music Intrinsically with LLM (2024.findings-acl)
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Ruibin Yuan, Hanfeng Lin, Yi Wang, Zeyue Tian, Shangda Wu, Tianhao Shen, Ge Zhang, Yuhang Wu, Cong Liu, Ziya Zhou, Liumeng Xue, Ziyang Ma, Qin Liu, Tianyu Zheng, Yizhi Li, Yinghao Ma, Yiming Liang, Xiaowei Chi, Ruibo Liu, Zili Wang, Chenghua Lin, Qifeng Liu, Tao Jiang, Wenhao Huang, Wenhu Chen, Jie Fu, Emmanouil Benetos, Gus Xia, Roger Dannenberg, Wei Xue, Shiyin Kang, Yike Guo
| Challenge: | Despite LLMs' impressive capabilities in musical knowledge, music reasoning remains an unsolved task. |
| Approach: | They propose an open-source large language model (LLM) that integrates intrinsic musical abilities into LLaMA2 and GPT-3.5. |
| Outcome: | The proposed model can understand and generate music with a pure text tokenizer without external multi-modal neural structures or tokenizers. |
Revisiting Demonstration Selection Strategies in In-Context Learning (2024.acl-long)
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| Challenge: | Large language models (LLMs) have shown an impressive ability to perform a wide range of tasks using in-context learning (ICL). |
| Approach: | They propose a data- and model-dependent method to select models using in-context learning, TopK + ConE, and propose unified explanations for the effectiveness of previous methods. |
| Outcome: | The proposed method improves language understanding and generation tasks with different model scales. |
TriPlay-RL: Tri-Role Self-Play Reinforcement Learning for LLM Safety Alignment (2026.acl-long)
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Zhewen Tan, Wenhan Yu, Jianfeng Si, Tongxin Liu, Kaiqi Guan, Huiyan Jin, Jiawen Tao, Xiaokun Yuan, Xiangzheng Zhang, Duohe Ma, Tong Yang, Lin Sun
| Challenge: | Existing approaches to safety alignment of large language models rely on costly manual annotations or human review. |
| Approach: | They propose a closed-loop reinforcement learning framework called TriPlay-RL that enables iterative collaboration among three roles with near-zero manual annotation. |
| Outcome: | The proposed framework achieves 20%–50% improvement in adversarial effectiveness while preserving high output diversity while achieving 10%–30% gains in safety performance without degrading general reasoning capability. |
Do Large Language Models Rank Fairly? An Empirical Study on the Fairness of LLMs as Rankers (2024.naacl-long)
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| Challenge: | Recent studies have shown that Large Language Models (LLMs) are more efficient in natural language understanding tasks. |
| Approach: | They evaluate large language models (LLMs) using a TREC Fair Ranking dataset . they assess fairness from both user and content perspectives . |
| Outcome: | The proposed model outperforms the existing models in the fair ranking task. |
Modeling Layout Reading Order as Ordering Relations for Visually-rich Document Understanding (2024.emnlp-main)
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Chong Zhang, Yi Tu, Yixi Zhao, Chenshu Yuan, Huan Chen, Yue Zhang, Mingxu Chai, Ya Guo, Huijia Zhu, Qi Zhang, Tao Gui
| Challenge: | Existing models of layout reading order do not convey the complete reading order information in the layout. |
| Approach: | They propose to model layout reading order as ordering relations over layout elements . they propose a reading-order-relation-enhancing pipeline to improve model performance . |
| Outcome: | The proposed model outperforms existing models on a visual-rich document dataset and on eight cross-domain VrD-IE/QA tasks without targeted optimization. |
ATLAS: Orchestrating Heterogeneous Models and Tools for Multi-Domain Complex Reasoning (2026.findings-acl)
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Jinyang Wu, Guocheng Zhai, Ruihan Jin, Jiahao Yuan, Yuhao Shen, Shuai Zhang, Zhengqi Wen, Jianhua Tao
| Challenge: | Existing approaches to optimize large language models with external tools are limited. |
| Approach: | They propose a dual-path framework for dynamic tool usage in cross-domain complex reasoning . they exploit empirical priors for domain-specific alignment and RL-based multi-step routing . |
| Outcome: | The proposed framework outperforms closed-source models and existing methods on in-distribution and out-of-distortion tasks. |
ComRAG: Retrieval-Augmented Generation with Dynamic Vector Stores for Real-time Community Question Answering in Industry (2025.acl-industry)
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| Challenge: | Existing methods for Community Question Answering (CQA) focus on static knowledge, limiting their applicability to real-world scenarios. |
| Approach: | They propose a retrieval-augmented generation framework for real-time industrial CQA that integrates static knowledge with dynamic historical QA pairs via a centroid-based memory mechanism. |
| Outcome: | The proposed framework outperforms baselines on three industrial CQA datasets and achieves 25.9% improvement in vector similarity, reducing latency by 8.7%–23.3%, and lowering chunk growth from 20.23% to 2.06% over iterations. |
Rethinking Expert Trajectory Utilization in LLM Post-training for Mathematical Reasoning (2026.acl-long)
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Bowen Ding, Yuhan Chen, Jiayang Lyu, Jiyao Yuan, Qi Zhu, Shuangshuang Tian, Dantong Zhu, Futing Wang, Heyuan Deng, Fei Mi, Lifeng Shang, Tao Lin
| Challenge: | evolving generic Large Language Models into specialized Large Reasoning Models requires effective post-training. |
| Approach: | They propose a plasticity-ceiling framework to harness expert trajectories . they establish the Sequential SFT-then-RL pipeline as the superior standard . |
| Outcome: | The proposed framework overcomes stability and premature convergence deficits in synchronized approaches. |
ToolHop: A Query-Driven Benchmark for Evaluating Large Language Models in Multi-Hop Tool Use (2025.acl-long)
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Junjie Ye, Zhengyin Du, Xuesong Yao, Weijian Lin, Yufei Xu, Zehui Chen, Zaiyuan Wang, Sining Zhu, Zhiheng Xi, Siyu Yuan, Tao Gui, Qi Zhang, Xuanjing Huang, Jiecao Chen
| Challenge: | Effective evaluation of multi-hop tool use is critical for analyzing the understanding, reasoning, and function-calling capabilities of large language models. |
| Approach: | They propose a dataset that provides rigorous evaluation of multi-hop tool use. |
| Outcome: | The proposed model achieves 49.04% accuracy across five model families. |
TextFlint: Unified Multilingual Robustness Evaluation Toolkit for Natural Language Processing (2021.acl-demo)
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Xiao Wang, Qin Liu, Tao Gui, Qi Zhang, Yicheng Zou, Xin Zhou, Jiacheng Ye, Yongxin Zhang, Rui Zheng, Zexiong Pang, Qinzhuo Wu, Zhengyan Li, Chong Zhang, Ruotian Ma, Zichu Fei, Ruijian Cai, Jun Zhao, Xingwu Hu, Zhiheng Yan, Yiding Tan, Yuan Hu, Qiyuan Bian, Zhihua Liu, Shan Qin, Bolin Zhu, Xiaoyu Xing, Jinlan Fu, Yue Zhang, Minlong Peng, Xiaoqing Zheng, Yaqian Zhou, Zhongyu Wei, Xipeng Qiu, Xuanjing Huang
| Challenge: | Existing approaches to textual robustness evaluation focus on slightly modifying the input data, which maintains the original meaning and results in a different prediction. |
| Approach: | They propose a multilingual robustness evaluation toolkit for NLP that integrates universal text transformations, task-specific transformations and adversarial attack. |
| Outcome: | The toolkit includes universal text transformation, task-specific transformation, adversarial attack, subpopulation, and their combinations to provide comprehensive robustness analyses. |
Named Entity Recognition in Multi-level Contexts (2020.aacl-main)
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| Challenge: | Existing methods for named entity recognition are unsatisfactory for recognizing entities in limited or ambiguous sentence-level contexts. |
| Approach: | They propose a framework to incorporate multi-level contexts for named entity recognition using TagLM as a baseline model and an auxiliary task to mine word-level contextual information. |
| Outcome: | The proposed framework is based on a set of sentence-level contexts and a document-level task to mine word-level contextual information. |
MathFlow: Enhancing the Perceptual Flow of MLLMs for Visual Mathematical Problems (2026.acl-long)
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| Challenge: | Existing multimodal large language models (MLLMs) exhibit significant limitations when extracting essential information and reasoned properties from diagrams and performing complex reasoning based on these visual inputs. |
| Approach: | They propose a benchmark that provides a fine-grained evaluation of MLLMs’ perception and reasoning capabilities. |
| Outcome: | The proposed benchmark shows that existing MLLMs exhibit limitations when extracting essential information and reasoned properties from diagrams and performing complex reasoning based on these visual inputs. |