Papers by Haonan He
Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models (2025.findings-emnlp)
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Haonan He, Yuchen Ren, Yining Tang, Ziyang Xu, Junxian Li, Minghao Yang, Di Zhang, Yuan Dong, Tao Chen, Shufei Zhang, Yuqiang Li, Nanqing Dong, Wanli Ouyang, Dongzhan Zhou, Peng Ye
| Challenge: | Biology-Instructions is the first large-scale instruction-tuning dataset for multi-omics biological sequences. |
| Approach: | They propose a large-scale instruction-tuning dataset for multi-omics biological sequences . they propose 'chatMultiOmics' to overcome limitations of current LLMs on multi-ome tasks . |
| Outcome: | The proposed dataset bridges LLMs and complex biological sequence-related tasks while maintaining conversational fluency. |
VideoScore: Building Automatic Metrics to Simulate Fine-grained Human Feedback for Video Generation (2024.emnlp-main)
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Xuan He, Dongfu Jiang, Ge Zhang, Max Ku, Achint Soni, Sherman Siu, Haonan Chen, Abhranil Chandra, Ziyan Jiang, Aaran Arulraj, Kai Wang, Quy Do, Yuansheng Ni, Bohan Lyu, Yaswanth Narsupalli, Rongqi Fan, Zhiheng Lyu, Bill Yuchen Lin, Wenhu Chen
| Challenge: | Existing video metrics are lagging behind in providing reliable scores over generated videos due to lack of large-scale human-annotated dataset. |
| Approach: | They propose to use VideoFeedback to train a human-annotated multi-aspect score over 37.6K synthesized videos from 11 existing video generative models. |
| Outcome: | The proposed model outperforms the prior best metrics by 50 points in the test. |
MCAD: Multi-teacher Cross-modal Alignment Distillation for efficient image-text retrieval (2024.findings-naacl)
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| Challenge: | Large-scale visual-language pretraining models have shown remarkable capabilities in understanding both vision and language. |
| Approach: | They propose a multi-teacher cross-modality alignment distillation technique to integrate the advantages of single-stream and dual-stream models. |
| Outcome: | The proposed model is lightweight and has only 100M running memory and 8.0ms search latency. |
TinyJudge: Unverifiable Constraint Alignment via Lightweight Specialist Ensembles (2026.acl-long)
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Yirong Zeng, Yufei Liu, Xiao Ding, Yutai Hou, Yuxian Wang, Wu Ning, Haonan Song, Dandan Tu, Qixun Zhang, Yuxiang He, Bibo Cai, Ting Liu
| Challenge: | Instruction Following (IF) is a core capability of LLMs, requiring strict adherence to diverse constraints. |
| Approach: | They propose a framework that uses tiny language models to evaluate instruction following . they propose to use a set of specialized tiny language model to provide rewards for soft constraints. |
| Outcome: | The proposed framework outperforms baseline models by 12% and speeds up training time by 3. |