Papers by Wanli Yang
Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models (2025.findings-emnlp)
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Haonan He, Yuchen Ren, Yining Tang, Ziyang Xu, Junxian Li, Minghao Yang, Di Zhang, Yuan Dong, Tao Chen, Shufei Zhang, Yuqiang Li, Nanqing Dong, Wanli Ouyang, Dongzhan Zhou, Peng Ye
| Challenge: | Biology-Instructions is the first large-scale instruction-tuning dataset for multi-omics biological sequences. |
| Approach: | They propose a large-scale instruction-tuning dataset for multi-omics biological sequences . they propose 'chatMultiOmics' to overcome limitations of current LLMs on multi-ome tasks . |
| Outcome: | The proposed dataset bridges LLMs and complex biological sequence-related tasks while maintaining conversational fluency. |
The Mirage of Model Editing: Revisiting Evaluation in the Wild (2025.acl-long)
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| Challenge: | despite near-perfect results, effectiveness of model editing in real-world applications remains unclear. |
| Approach: | They propose QAEdit and WILD to better reflect real-world use of model editing . they propose a benchmark aligned with widely used question answering datasets and a task-agnostic evaluation framework . |
| Outcome: | The proposed QAEdit benchmark and WILD evaluation framework show that current models perform worse than previously reported. |
ResearchBench: Benchmarking LLMs in Scientific Discovery via Inspiration-Based Task Decomposition (2026.findings-acl)
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Yujie Liu, Zonglin Yang, Tong Xie, Jinjie Ni, Ben Gao, Yuqiang Li, Shixiang Tang, Wanli Ouyang, Erik Cambria, Dongzhan Zhou
| Challenge: | Large language models have shown potential in assisting scientific research, yet their ability to discover high-quality research hypotheses remains unexamined due to the lack of a dedicated benchmark. |
| Approach: | They propose a benchmark for evaluating large language models on a sufficient set of scientific discovery sub-tasks. |
| Outcome: | The proposed framework extracts critical components from papers across 12 disciplines with expert validation confirming its accuracy. |
Beyond One-Preference-Fits-All Alignment: Multi-Objective Direct Preference Optimization (2024.findings-acl)
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| Challenge: | Recent approaches to language model alignment assume homogeneous human preferences, but actual human preferences vary widely and are hard to satisfy with a single language model. |
| Approach: | They propose an RL-free extension of Direct Preference Optimization (DPO) that folds language modeling directly into reward modeling and trains language models as collective reward models that combine all objectives with specific weights. |
| Outcome: | The proposed method matches or outperforms existing methods in safety alignment and long-form question answering. |
Nature-Inspired Population-Based Evolution of Large Language Models (2026.acl-long)
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| Challenge: | a new framework for population-based evolution of large language models is emerging . a population-driven evolution of LLMs is a key component of evolution, authors say . |
| Approach: | They propose a framework that allows for population-based evolution of large language models . they start with a population of parent LLMs and allow this population to evolve . |
| Outcome: | The proposed framework outperforms existing methods on 12 datasets. |
Blinded by Generated Contexts: How Language Models Merge Generated and Retrieved Contexts When Knowledge Conflicts? (2024.acl-long)
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| Challenge: | Recent advances in augmenting Large Language Models (LLMs) with auxiliary information have significantly revolutionized their efficacy in knowledge-intensive tasks. |
| Approach: | They propose a systematic framework to identify whether LLMs’ responses are attributed to either generated or retrieved contexts. |
| Outcome: | The proposed framework identifies whether LLMs’ responses are attributed to either generated or retrieved contexts. |
The Butterfly Effect of Model Editing: Few Edits Can Trigger Large Language Models Collapse (2024.findings-acl)
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| Challenge: | Even a single edit can trigger model collapse, manifesting as significant performance degradation in various benchmark tasks. |
| Approach: | They propose to use perplexity as a surrogate metric to determine whether an edited model's performance is affected by a single edit. |
| Outcome: | The proposed method shows that even a single edit can cause model collapse, manifesting as significant performance degradation in various benchmark tasks. |
RoleLLM: Benchmarking, Eliciting, and Enhancing Role-Playing Abilities of Large Language Models (2024.findings-acl)
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Noah Wang, Z.y. Peng, Haoran Que, Jiaheng Liu, Wangchunshu Zhou, Yuhan Wu, Hongcheng Guo, Ruitong Gan, Zehao Ni, Jian Yang, Man Zhang, Zhaoxiang Zhang, Wanli Ouyang, Ke Xu, Wenhao Huang, Jie Fu, Junran Peng
| Challenge: | Large Language Models (LLMs) have paved the way for complex tasks such as role-playing. |
| Approach: | They propose a framework to benchmark, elicit, and enhance role-playing abilities in Large Language Models. |
| Outcome: | The proposed framework improves role-playing abilities with 168,093 samples. |
SeedBench: A Multi-task Benchmark for Evaluating Large Language Models in Seed Science (2025.acl-long)
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Jie Ying, Zihong Chen, Zhefan Wang, Wanli Jiang, Chenyang Wang, Zhonghang Yuan, Haoyang Su, Huanjun Kong, Fan Yang, Nanqing Dong
| Challenge: | Seed science is essential for modern agriculture, but its application in seed science remains limited due to a shortage of experts and limited availability of online resources. |
| Approach: | They evaluate 26 leading large language models and compare them against a set of benchmarks . they find that there is a gap between the power of LLMs and real-world seed science problems . |
| Outcome: | The new seed benchmark highlights the gap between the power of large language models and real-world seed science problems. |
The Fall of ROME: Understanding the Collapse of LLMs in Model Editing (2024.findings-emnlp)
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| Challenge: | Recent studies have found that model editing methods can cause large language models to collapse with just a single edit. |
| Approach: | They propose a method that uses prefixed keys and adds prefixes during testing to prevent model collapse. |
| Outcome: | The proposed method prevents model collapse while maintaining effectiveness, the authors show . Rank-One Model Editing (ROME) has been found to cause model collapse with just a single edit . |
BaseCal: Unsupervised Confidence Calibration via Base Model Signals (2026.acl-long)
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Hexiang Tan, Wanli Yang, Junwei Zhang, Xin Chen, Rui Tang, Du Su, Jingang Wang, Yuanzhuo Wang, Fei Sun, Xueqi Cheng
| Challenge: | Post-trained LLMs typically compromise reliability with severe overconfidence, resulting in inaccurate responses. |
| Approach: | They propose a solution that feeds PoLLMs into the base LLM to get confidence. |
| Outcome: | The proposed solution reduces expected calibration error (ECE) by 42.90% compared to the best unsupervised baselines. |