Papers by Jiyue Jiang
How Well Do LLMs Handle Cantonese? Benchmarking Cantonese Capabilities of Large Language Models (2025.findings-naacl)
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| Challenge: | Cantonese has scant representation in NLP research, especially compared to other languages from similarly developed regions. |
| Approach: | They propose to evaluate Cantonese LLM performance in factual generation, mathematical logic, complex reasoning, and general knowledge in Cantonesian. |
| Outcome: | The proposed models will evaluate Cantonese's performance in factual generation, mathematical logic, complex reasoning, and general knowledge in Cantone. |
Large Language Models in Bioinformatics: A Survey (2025.findings-acl)
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| Challenge: | Large Language Models (LLMs) are revolutionizing bioinformatics, enabling advanced analysis of DNA, RNA, proteins, and single-cell data. |
| Approach: | They examine the evolution of Large Language Models (LLMs) in bioinformatics and precision medicine by focusing on genomic sequence modeling, RNA structure prediction, protein function inference, and single-cell transcriptomics. |
| Outcome: | The proposed models are capable of predicting RNA structure and function and predicting single-cell transcriptomics. |
Developing and Utilizing a Large-Scale Cantonese Dataset for Multi-Tasking in Large Language Models (2025.findings-emnlp)
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Jiyue Jiang, Alfred Kar Yin Truong, Yanyu Chen, Qinghang Bao, Sheng Wang, Pengan Chen, Jiuming Wang, Lingpeng Kong, Yu Li, Chuan Wu
| Challenge: | Cantonese is considered a low-resource language due to the dominance of Mandarin . rich colloquial vocabulary of Cantone, English loanwords, and code-switching characteristics add to the complexity of corpus collection and processing. |
| Approach: | We collect Cantonese texts from open source corpora, Hong Kong-specific forums, Wikipedia . we refine the model through supervised fine-tuning on curated Cantonesian tasks . |
| Outcome: | The model achieves state-of-the-art (SOTA) performance on four Cantonese benchmarks. |
RBPtool: A Deep Language Model Framework for Multi-Resolution RBP-RNA Binding Prediction and RNA Molecule Design (2025.emnlp-main)
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Jiyue Jiang, Yitao Xu, Zikang Wang, Yihan Ye, Yanruisheng Shao, Yuheng Shan, Jiuming Wang, Xiaodan Fan, Jiao Yuan, Yu Li
| Challenge: | RNA-binding proteins play key roles in post-transcriptional gene regulation . existing methods focus on shallow sequence features or coarse structural representations . large language models allow for precise modeling and biologically informed de novo RNA design . |
| Approach: | They extend RPI15223 into a multi-resolution, structure-level RBP-RNA dataset and introduce RBPtool, a framework that fuses sequence and structural information. |
| Outcome: | The proposed framework achieves state-of-the-art performance on public benchmarks and the RPI15223 dataset while supporting fine-grained level predictions. |
A Cognitive Stimulation Dialogue System with Multi-source Knowledge Fusion for Elders with Cognitive Impairment (2023.acl-long)
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| Challenge: | Existing cognitive stimulation systems lack data on how to integrate emotional support and therapy principles into chit-chat dialogue systems. |
| Approach: | They propose a multi-source knowledge fusion method for CS dialogue to generate open-ended responses guided by the therapy principle and emotional support strategy. |
| Outcome: | The proposed method generates open-ended responses guided by the therapy principle and emotional support strategy of the target response. |
LoRA Meets Dropout under a Unified Framework (2024.findings-acl)
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| Challenge: | Parameter-efficientfinetuning (PEFT) has gained popularity as a lightweight approach for model customization. |
| Approach: | They propose a parameter-efficient dropout method that is overfitting-prone and parameter-freezed. |
| Outcome: | The proposed method is superior to existing methods and compares with transformer-specific methods. |
LM2Protein: A Structure-to-Token Protein Large Language Model (2025.findings-emnlp)
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| Challenge: | RNA-binding proteins are critical for various molecular functions, relying on their precise tertiary structures. |
| Approach: | They propose a method to integrate protein 3D structural data within a sequence processing framework. |
| Outcome: | The proposed method achieves high sequence recovery in inverse folding and protein-conditioned RNA design. |
ProReason: Multi-Modal Proactive Reasoning with Decoupled Eyesight and Wisdom (2025.emnlp-main)
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Jingqi Zhou, Sheng Wang, Jingwei Dong, Kai Liu, Lei Li, Jiahui Gao, Jiyue Jiang, Lingpeng Kong, Chuan Wu
| Challenge: | Large vision-language models often prioritize language knowledge over image information on visual reasoning tasks, incurring performance degradation. |
| Approach: | They propose a visual reasoning framework that decouples vision-reasoning capabilities and multi-run proactive perception. |
| Outcome: | The proposed framework outperforms existing models on benchmarks for open-source and closed-source models with 13.2% performance gain. |
PRoLoRA: Partial Rotation Empowers More Parameter-Efficient LoRA (2024.acl-long)
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| Challenge: | Partially Rotation-enhanced Low-Rank Adaptation (PRoLoRA) is an intra-layer sharing mechanism that circumvents the drawbacks of peer parameter-sharing methods. |
| Approach: | They propose a partially rotation-enhanced low-rank adaptation (PRoLoRA) that shares four components to reduce the cost of LoRA and improves model capacity. |
| Outcome: | Empirical results show that PRoLoRA outperforms LoRA on multiple instruction tuning datasets. |