A Neural Pipeline Approach for the PharmaCoNER Shared Task using Contextual Exhaustive Models (D19-57)
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| Challenge: | NER and concept indexing perform named entity recognition and concept identifiers (CUIs) in a knowledge base. |
| Approach: | They propose a neural pipeline approach that performs named entity recognition (NER) and concept indexing (CI) they use bi-LSTM to capture the semantic information of a sequence and classify them into entities or no entities . |
| Outcome: | The proposed approach performs named entity recognition (NER) and concept indexing (CI) which links them to concept unique identifiers (CUIs) in a knowledge base. |
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A Deep Learning-Based System for PharmaCoNER (D19-57)
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Ying Xiong, Yedan Shen, Yuanhang Huang, Shuai Chen, Buzhou Tang, Xiaolong Wang, Qingcai Chen, Jun Yan, Yi Zhou
| Challenge: | Efficient access to mentions of clinical entities is very important for using clinical text. |
| Approach: | They developed a pipeline system based on deep learning methods for this shared task . it achieves a micro-average F1-score of 0.9105 on track 1 and a mini-average LSTM score of 0.8391 on track 2 . |
| Outcome: | The proposed system achieves a micro-average F1-score of 0.9105 on track 1 and a mini-average score of 0.8391 on track 2. |
Deep Exhaustive Model for Nested Named Entity Recognition (D18-1)
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| Challenge: | Named entity recognition (NER) is a task of finding entities with specific semantic types such as Protein, Cell, and RNA in text. |
| Approach: | They propose a deep neural model for nested named entity recognition . they enumerate all possible regions or spans as potential entity mentions . |
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A Unified Generative Framework for Various NER Subtasks (2021.acl-long)
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| Challenge: | Named Entity Recognition (NER) is the task of identifying spans that represent entities in sentences. |
| Approach: | They propose to formulate NER subtasks as entity span sequence generation task . framework can be used to solve all three kinds of NER tasks without tagging schema . |
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A Neural Layered Model for Nested Named Entity Recognition (N18-1)
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| Challenge: | Entity mentions embedded in longer entity mentions are referred to as nested entities due to the properties of natural language. |
| Approach: | They propose a neural model that dynamically stacks flat NER layers to identify nested entities by capturing sequential context representation with bidirectional long-term memory. |
| Outcome: | The proposed model outperforms state-of-the-art feature-based systems on nested NER, achieving 74.7% and 72.2% on GENIA and ACE2005 datasets, respectively in terms of F-score. |
A Unified MRC Framework for Named Entity Recognition (2020.acl-main)
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| Challenge: | Named entity recognition is divided into nested NER and flat NER depending on whether entities are nesting. |
| Approach: | They propose to formulate named entity recognition task as machine reading comprehension task instead of sequence labeling problem . |
| Outcome: | The proposed framework achieves vast amount of performance boost over current models on nested and flat NER datasets. |
Better Feature Integration for Named Entity Recognition (2021.naacl-main)
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| Challenge: | Existing approaches to named entity recognition (NER) focus on stacking the LSTM and graph neural networks (GCNs) however, the exact interaction mechanism between the two types of features is not clear and the performance gain is not significant. |
| Approach: | They propose a model that incorporates both types of features with a Synergized-LSTM which captures how the two types of feature interact. |
| Outcome: | The proposed model achieves better performance than previous approaches while requiring fewer parameters. |
HiTRANS: A Hierarchical Transformer Network for Nested Named Entity Recognition (2021.findings-emnlp)
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| Challenge: | Existing studies for named entity recognition focus on flat NER, i.e., without nested entities, by sequence labeling methods. |
| Approach: | They propose a Hierarchical Transformer network which decomposes the input sentence into multi-grained spans and enhances the representation learning in a hierarchical manner. |
| Outcome: | The proposed method achieves much better performance than the state-of-the-art approaches on GENIA, ACE-2004, ace-2005 and NNE datasets. |
T-NER: An All-Round Python Library for Transformer-based Named Entity Recognition (2021.eacl-demos)
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| Challenge: | Language model (LM) pretraining has led to consistent improvements in many downstream tasks, including named entity recognition (NER). |
| Approach: | They propose a Python library for NER LM finetuning that facilitates cross-domain and cross-lingual generalization of LMs finetuned on NER. |
| Outcome: | The proposed library outperforms LMs trained on NERs in cross-domain and cross-lingual generalization tests on nine datasets. |
Pyramid: A Layered Model for Nested Named Entity Recognition (2020.acl-main)
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| Challenge: | Named Entity Recognition (NER) is a fundamental NLP task. |
| Approach: | They propose a pyramid-like layered model for Nested Named Entity Recognition . token or text region embeddings are recursively inputted into L flat NER layers . |
| Outcome: | The proposed model achieves state-of-the-art F1 scores in nested NER on ACE-2004, ACE 2005, GENIA, and NNE. |
Nested Named Entity Recognition with Span-level Graphs (2022.acl-long)
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| Challenge: | Named entity recognition is one of the major subtasks of information extraction for extracting categorized named entities from unstructured text. |
| Approach: | They propose to use retrieval-based span-level graphs to connect spans and entities in the training data based on n-gram features to integrate information of similar neighbor entities into the span representation. |
| Outcome: | The proposed method achieves general improvements on all three benchmarks and special superiority on low frequency entities. |