Papers by Yuchen Shi
ProUIE: A Macro-to-Micro Progressive Learning Method for LLM-based Universal Information Extraction (2026.findings-acl)
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Wenda Liu, Song Zhigang, Shuai Nie, Guangyao Liu, Lisung Chen, Binyu Yang, Yaran Chen, Peng Zhou, Hongzhen Wang, Yuchen Liu, Wenyue Hu, Jiaming Xu, Runyu Shi, Ying Huang
| Challenge: | ProUIE improves universal information extraction (UIE) without external information . many LLM-based methods rely on extra schema cues, external resources or complex alignment and verification pipelines . |
| Approach: | They propose a Macro-to-Micro progressive learning approach that improves UIE without external information. |
| Outcome: | ProUIE outperforms instruction-tuned baselines on average for NER and RE while using a smaller backbone. |
Graph-GRPO: Stabilizing Multi-Agent Topology Learning via Group Relative Policy Optimization (2026.findings-acl)
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Yueyang Cang, Xiaoteng Zhang, Erlu Zhao, Zehua Ji, Yuhang Liu, Yuchen He, Zhiyuan Ning, Chen Yijun, Wenge Que, Li Shi
| Challenge: | Recent approaches to optimize communication topology rely on single-sample policy gradients with absolute rewards. |
| Approach: | They propose a topology optimization framework that integrates Group Relative Policy Optimization. |
| Outcome: | The proposed topology optimization framework outperforms state-of-the-art methods on reasoning and code generation benchmarks. |
MedAdapter: Efficient Test-Time Adaptation of Large Language Models Towards Medical Reasoning (2024.emnlp-main)
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| Challenge: | Large language models (LLMs) have improved generation and reasoning capabilities compared to traditional BERT-sized models due to massive number of parameters and extensive pre-training on vast textual corpora. |
| Approach: | They propose a unified post-hoc adapter for test-time adaptation of large language models . they propose to fine-tune only a small BERT-sized adapter to rank candidate LLMs . |
| Outcome: | The proposed adapter improves performance on four biomedical tasks without requiring computational resources or sharing data with third parties. |
BMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers (2024.emnlp-main)
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Ran Xu, Wenqi Shi, Yue Yu, Yuchen Zhuang, Yanqiao Zhu, May Dongmei Wang, Joyce Ho, Chao Zhang, Carl Yang
| Challenge: | Developing effective biomedical retrieval models is important for excelling at knowledge-intensive biomedically tasks but still challenging due to the lack of sufficient publicly annotated biomedic data and computational resources. |
| Approach: | They propose a series of dense retrievers for enhancing biomedical retrieval via unsupervised pre-training on large biomedically corpora, followed by instruction fine-tuning on a combination of labeled datasets and synthetic pairs. |
| Outcome: | Experiments on 5 biomedical tasks across 11 datasets confirm the performance of the retrieval model on various biomedically demanding tasks. |
EHRAgent: Code Empowers Large Language Models for Few-shot Complex Tabular Reasoning on Electronic Health Records (2024.emnlp-main)
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Wenqi Shi, Ran Xu, Yuchen Zhuang, Yue Yu, Jieyu Zhang, Hang Wu, Yuanda Zhu, Joyce Ho, Carl Yang, May Dongmei Wang
| Challenge: | EHRAgent enables clinicians to interact with EHRs using natural language . reliance on rule-based conversion systems often necessitates additional training or effort from data engineers. |
| Approach: | They propose a large language model agent that generates and executes code in natural language to facilitate clinicians in directly interacting with EHRs. |
| Outcome: | The proposed agent outperforms the strongest baseline by up to 29.6% in success rate on three real-world EHR datasets. |
WorkForceAgent-R1: Incentivizing Reasoning Capability in LLM-based Web Agents via Reinforcement Learning (2026.findings-eacl)
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| Challenge: | Existing web agents relying on supervised fine-tuning struggle with generalization and robustness due to insufficient reasoning capabilities when handling the inherently dynamic nature of web interactions. |
| Approach: | They propose a large language model-empowered web agent that trains using a rule-based reinforcement learning framework to enhance single-step reasoning and planning for business-oriented web navigation tasks. |
| Outcome: | The proposed agent outperforms baseline LLM-based agents on the WorkArena benchmark by 10.26–16.59%. |
Negation Triplet Extraction with Syntactic Dependency and Semantic Consistency (2024.lrec-main)
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| Challenge: | Negation understanding is crucial to many downstream tasks such as sentiment analysis, question answering, Web search and natural language inference. |
| Approach: | They propose a novel negation triplet extraction task which aims to extract negation subject along with negation cue and scope. |
| Outcome: | The proposed model is based on a generative pretrained language model with a multi-task learning framework and achieves the best performance compared to baselines. |
Skeletons Matter: Dynamic Data Augmentation for Text-to-Query (2025.emnlp-main)
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| Challenge: | Existing studies focus on a single query language, resulting in limited generalizability . a new task paradigm is proposed to unify semantic parsing tasks across different query languages . |
| Approach: | They propose a task paradigm that unifies parsing tasks across query languages . they identify query skeletons as a shared optimization target of Text-to-Query tasks . |
| Outcome: | The proposed method achieves state-of-the-art performance using only a small amount of synthesized data. |
Dr. Assistant: Enhancing Clinical Diagnostic Inquiry via Structured Diagnostic Reasoning Data and Reinforcement Learning (2026.findings-acl)
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Yue Guo, Fanfu Wang, Jianwei Lv, Xincheng Shi, Yuchen Li, Youya Wang, Yunsheng Zeng, Yujing Liu, Yunhao Qiao, Gen Li, Junfeng Wang, Bo Yuan
| Challenge: | Clinical Decision Support Systems (CDSSs) provide reasoning and inquiry guidance for physicians, yet they face high maintenance costs and low generalization capability. |
| Approach: | They propose a clinical diagnostic model with clinical reasoning and inquiry skills, the Dr. Assistant, and a pipeline to capture abstract reasoning logic. |
| Outcome: | The proposed model outperforms open-source models and achieves competitive performance to closed-source model. |
Agentic-R: Learning to Retrieve for Agentic Search (2026.findings-acl)
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| Challenge: | Existing retrievers for single-turn retrieval-augmented generation (RAG) rely on similarity-based retrievers, but similar passages are not always useful for final answer generation. |
| Approach: | They propose a retrieval-augmented-generation retriever that integrates reasoning with retrieval . they use local query-passage relevance and global answer correctness to measure passage utility . |
| Outcome: | The proposed retriever outperforms existing retrievers on QA benchmarks on seven single-hop and multi-hop searches. |
RAP-ID: Mechanistic Prompt Injection Detection via Impostor Behavior Analysis (2026.findings-acl)
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| Challenge: | Existing defenses rely on externally deployed guardrail models or response inspection . current defenses depend on external guardrails or response inspecting . |
| Approach: | They propose a mechanistic, train-free detection framework that operates exclusively on internal state dynamics during the initial forward pass. |
| Outcome: | The proposed framework achieves competitive performance with significant overall improvements compared to heuristic methods. |
ToNER: Type-oriented Named Entity Recognition with Generative Language Model (2024.lrec-main)
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| Challenge: | Input too many potential entity types would distract the model inevitably. |
| Approach: | They propose to use a generative model to exploit entity types' merit on promoting NER task by appending a type matching model to identify the entity types most likely to appear in the sentence. |
| Outcome: | The proposed framework exploits entity types' merit on promoting NER task by adding auxiliary task to the model to discover the entity types. |
Deep Differential Amplifier for Extractive Summarization (2021.acl-long)
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| Challenge: | Existing approaches to extract summary from document with a disproportionate ratio of selected and unselected sentences are far from human performance. |
| Approach: | They propose a model that rebalances sentence-level extractive summarization by amplifying the semantic difference between each sentence and all other sentences and applying the residual unit as the second item of the differential amplifier to deepen the architecture. |
| Outcome: | The proposed model performs competitively against state-of-the-art methods on two benchmark datasets. |
Improved Visual Story Generation with Adaptive Context Modeling (2023.findings-acl)
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| Challenge: | a recent work shows that diffusion models generate images of high resolution and semantic consistency to text prompts. |
| Approach: | They propose a method that uses adaptive context modeling to improve leading system . they evaluate their method on pororoSV and FlintstonesSV datasets . |
| Outcome: | The proposed method achieves state-of-the-art FID scores on pororo and Flintstones datasets. |
Towards Effective and Efficient Multi-Agent Language Model Systems: Foundations, Prospects, and Applications (2026.acl-tutorials)
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| Challenge: | Multi-agent systems powered by large language models still face challenges . tutorial focuses on three core components to build effective and efficient systems . |
| Approach: | This tutorial introduces recent advances in building effective and efficient multi-agent LLM systems . it focuses on three core components: model distillation, dynamic routing, memory- and compute efficient serving . |
| Outcome: | This tutorial introduces state-of-the-art techniques for building efficient and efficient multi-agent LLM systems . it covers coordination and communication among agents, crucial for collective performance . |
Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models (2024.findings-acl)
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Ran Xu, Hejie Cui, Yue Yu, Xuan Kan, Wenqi Shi, Yuchen Zhuang, May Dongmei Wang, Wei Jin, Joyce Ho, Carl Yang
| Challenge: | Clinical natural language processing (NLP) is a subfield that requires the extraction, analysis, and interpretation of unstructured clinical text. |
| Approach: | They propose a model which infuses knowledge into clinical text generation with LLMs for clinical NLP tasks. |
| Outcome: | The proposed model improves performance across 8 clinical NLP tasks and 18 datasets by 7.7%-8.7% on average. |
RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records (2024.acl-short)
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| Challenge: | Existing deep learning models for EHRs rely on knowledge from a single source and do not capture the semantic information for medical codes. |
| Approach: | They propose a Retrieval AugMentation pipeline to augment clinical prediction on EHRs . they use multiple knowledge sources to convert them into text and use consistency regularization to capture complementary information from patient visits and summarized knowledge. |
| Outcome: | Experiments on two EHR datasets show that RAM-EHR improves clinical prediction tasks. |
RAG in the Wild: On the (In)effectiveness of LLMs with Mixture-of-Knowledge Retrieval Augmentation (2026.findings-acl)
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| Challenge: | Retrieval-augmented generation (RAG) enhances large language models by integrating external knowledge retrieved at inference time. |
| Approach: | They evaluate RAG systems using MassiveDS, a large-scale datastore with mixture of knowledge. |
| Outcome: | The proposed approach improves performance on knowledge-intensive NLP tasks. |
CARE-STaR: Constraint-aware Self-taught Reasoner (2025.findings-acl)
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Zhiliang Li, Bo Tang, Yijun Niu, Beihong Jin, Qiwen Shi, Yuchen Feng, Zhiyu Li, Jie Hu, Mingchuan Yang, Feiyu Xiong
| Challenge: | Recent research on instruction following has demonstrated that LLMs can handle complex instructions. |
| Approach: | They propose to assign constraints to different levels of constraints in instructions . they use chain-of-thought and self-taught reasoner methods to identify constraints . |
| Outcome: | The proposed method outperforms supervised fine-tuning (SFT) on three instruction-following benchmarks. |
UniCreative: Unifying Long-form Logic and Short-form Sparkle via Reference-Free Reinforcement Learning (2026.findings-acl)
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Xiaolong Wei, Zerun Zhu, Simin Niu, Xingyu Zhang, Peiying Yu, Changxuan Xiao, Yuchen Li, Jicheng Yang, Zhejun Zhao, Chong Meng, Long Xia, Daiting Shi
| Challenge: | Existing alignment paradigms for creative writing use static reward signals and supervised data. |
| Approach: | They propose a constraint-aware reward model that synthesizes query-specific criteria to provide fine-grained preference judgments. |
| Outcome: | The proposed framework aligns models with human preferences across content quality and structural paradigms without supervised fine-tuning and ground-truth references. |