Papers by Wenjun Lin
STELLA: A Multimodal LLM for Protein Functional Annotation via Unified Sequence-Structure Encoding (2026.findings-acl)
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Hongwang Xiao, Wenjun Lin, Xi Chen, Hui Wang, Kai Chen, Jiashan Li, Yuancheng Sun, Sicheng Dai, Boya Wu, Qiwei Ye
| Challenge: | a multimodal protein language model (LLM) integrates sequence, structure, and function into functional annotation. |
| Approach: | They propose a multimodal protein language model that synergistically aligns bimodal representations with the textual modality to advance protein functional annotation. |
| Outcome: | The proposed model synergizes bimodal representations with the textual modality to advance protein functional annotation. |
Judging with Many Minds: Do More Perspectives Mean Less Prejudice? On Bias Amplification and Resistance in Multi-Agent Based LLM-as-Judge (2025.findings-emnlp)
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Chiyu Ma, Enpei Zhang, Yilun Zhao, Wenjun Liu, Yaning Jia, Peijun Qing, Lin Shi, Arman Cohan, Yujun Yan, Soroush Vosoughi
| Challenge: | LLM-as-Judge frameworks provide scalable alternative to human evaluation . but the question of how intrinsic biases manifest in these settings remains unexplored . |
| Approach: | They conduct systematic analysis of four bias types in multi-agent LLM-as-Judge frameworks . they find debate framework amplifies biases sharply after initial debate . |
| Outcome: | The proposed frameworks amplify biases after debate and show they are stronger in meta-judge scenarios. |