Papers by Natalie Stanley
Spatial Coordinates as a Cell Language: A Multi-Sentence Framework for Imaging Mass Cytometry Analysis (2025.findings-acl)
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| Challenge: | Existing single-cell LLMs struggle to integrate spatial information into natural language, limiting their ability to capture biological relationships. |
| Approach: | They propose a framework that integrates both single-cell expression and spatial information into natural language using a multi-sentence approach. |
| Outcome: | The proposed framework outperforms existing single-cell LLMs on preprocessed IMC datasets for diabetes and brain tumors while improving interpretability. |