Papers by Matthew Coole
Infrastructure for Semantic Annotation in the Genomics Domain (2020.lrec-1)
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Mahmoud El-Haj, Nathan Rutherford, Matthew Coole, Ignatius Ezeani, Sheryl Prentice, Nancy Ide, Jo Knight, Scott Piao, John Mariani, Paul Rayson, Keith Suderman
| Challenge: | a novel infrastructure for biomedical text mining combines NLP and corpus linguistics methods to provide a comprehensive corpus for literature-based discovery. |
| Approach: | They propose a novel pipeline for the collection, annotation, storage, retrieval and analysis of biomedical and life sciences literature . it uses an updatable Gene Ontology Semantic Tagger and a NLP pipeline scheduler to collect and process the corpus. |
| Outcome: | The proposed infrastructure allows for extreme-scale research on the open access PubMed Central archive. |
LexiDB: Patterns & Methods for Corpus Linguistic Database Management (2020.lrec-1)
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| Challenge: | LexiDB is a tool for storing, managing and querying corpus data. |
| Approach: | They propose to use LexiDB for storing, managing and querying corpus data. |
| Outcome: | The proposed methods outperform existing tools for corpus queries and storage. |