Papers by Junkai Zhang
SeCuRepair: Semantics-Aligned, Curriculum-Driven, and Reasoning-Enhanced Vulnerability Repair Framework (2026.acl-long)
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Chengran Yang, Ting Zhang, Jinfeng Jiang, Xin Zhou, Haoye Tian, Mingzhe Du, Jieke Shi, Junkai Chen, Yikun Li, Eng Lieh Ouh, Lwin Khin Shar, David Lo
| Challenge: | Existing methods for automating vulnerability repair suffer from syntactic overfitting . nvd published 49,230 Common Vulnerabilities and Exposures (CVE) records in 2025 alone . |
| Approach: | They propose a semantic-aware reward framework that optimizes for code semantic equivalence rather than lexical mimicry. |
| Outcome: | The proposed framework outperforms state-of-the-art frameworks on repository-level splits . it incorporates expert-aligned reasoning mechanism that grounds patch generation in structured diagnosis. |
Protein Large Language Models: A Comprehensive Survey (2025.findings-emnlp)
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Yijia Xiao, Wanjia Zhao, Junkai Zhang, Yiqiao Jin, Han Zhang, Zhicheng Ren, Renliang Sun, Haixin Wang, Guancheng Wan, Pan Lu, Xiao Luo, Yu Zhang, James Zou, Yizhou Sun, Wei Wang
| Challenge: | Existing studies focus on specific aspects or applications, but this study provides a comprehensive overview of Protein-specific large language models. |
| Approach: | This paper proposes a structured taxonomy of state-of-the-art ProteinLLMs . they analyze how they leverage large-scale protein sequence data for improved accuracy . |
| Outcome: | The proposed model covers their architectures, training datasets, evaluation metrics, and diverse applications. |
Training LLMs for Optimization Modeling via Iterative Data Synthesis and Structured Validation (2025.findings-emnlp)
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| Challenge: | Large Language Models (LLMs) are a promising tool for OR, but they face challenges when dealing with complex problems. |
| Approach: | They propose a framework that augments existing datasets and generates high-quality fine-tuning data tailored to OR. |
| Outcome: | The proposed framework augments existing datasets and generates high-quality fine-tuning data . it prevents error propagation and ensures the quality of the generated dataset . |
SecCoder: Towards Generalizable and Robust Secure Code Generation (2024.emnlp-main)
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| Challenge: | Existing secure code generation methods have limited generalizability to unseen test cases and poor robustness against the attacked model, leading to safety failures in code generation. |
| Approach: | They propose a generalizable and robust secure code generation method SecCoder by using in-context learning and the safe demonstration. |
| Outcome: | The proposed method achieves a significant security improvement of 7.20% on unseen test cases and better robustness against the attacked model. |
SecureVibeBench: Benchmarking Secure Vibe Coding of AI Agents via Reconstructing Vulnerability-Introducing Scenarios (2026.acl-long)
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Junkai Chen, Huihui Huang, Yunbo Lyu, Junwen An, Jieke Shi, Chengran Yang, Ting Zhang, Haoye Tian, Yikun Li, Zhenhao Li, Xin Zhou, Xing Hu, David Lo
| Challenge: | Existing benchmarks fail to capture scenarios in which vulnerabilities are introduced by humans . we evaluate 5 popular code agents supported by 5 LLMs on SecureVibeBench . |
| Approach: | They propose a benchmarking tool that compares 105 C/C++ secure coding tasks . they use real-world open-source vulnerabilities and a comprehensive evaluation tool . |
| Outcome: | The proposed benchmarks show that code agents struggle to produce correct and secure code . the best performing agent produces merely 23.8% correct and secured solutions . |