Papers by Francesco Candoli
OpenBioNER: Lightweight Open-Domain Biomedical Named Entity Recognition Through Entity Type Description (2025.findings-naacl)
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Alessio Cocchieri, Giacomo Frisoni, Marcos Martínez Galindo, Gianluca Moro, Giuseppe Tagliavini, Francesco Candoli
| Challenge: | Biomedical Named Entity Recognition (BioNER) is a computationally expensive and limited tool . specialized 7B NER LLMs and GPT-4o can't match textual spans with entity types . |
| Approach: | They propose a lightweight BERT-based cross-encoder architecture that can identify any biomedical entity using only its description. |
| Outcome: | The proposed system outperforms existing models that match textual spans with entity types rather than descriptions on biomedical benchmarks. |