Papers by Catarina Kiefe
DeepGeneMD: A Joint Deep Learning Model for Extracting Gene Mutation-Disease Knowledge from PubMed Literature (D19-57)
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| Challenge: | Identifying and understanding the pathogenesis of genetic diseases is an essential task. |
| Approach: | They propose a joint deep learning model for gene mutation-disease knowledge extraction that adapts the state-of-the-art hierarchical multi-task learning framework for joint inference on named entity recognition and relation extraction. |
| Outcome: | The proposed model achieves the average score of 0.45 on recognizing gene activities and disease entities and the average F1 score of 0.3 on extracting relations, ranking 1st in the AGAC RE task. |