Extracting Biomedical Entities from Noisy Audio Transcripts (2024.lrec-main)

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Challenge: Named Entity Recognition (NER) is particularly affected by noise, often termed the ASR-NLP gap.
Approach: They propose a dataset to bridge the ASR-NLP gap in the biomedical domain by extracting adverse drug reactions and mentions of entities from the Brief Test of Adult Cognition by Telephone (BTACT) exam.
Outcome: The proposed method can clean 2,000 clean and noisy recordings and eliminate errors using zero-shot and few-shot methods.

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Why Aren’t We NER Yet? Artifacts of ASR Errors in Named Entity Recognition in Spontaneous Speech Transcripts (2023.acl-long)

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Challenge: despite advances in language models, the transcript of spontaneous human-human conversations remains an insurmountable challenge for most models.
Approach: They examine the relationship between ASR and NER errors which limit NER models' ability to recover entity mentions from spontaneous speech transcripts.
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Audio De-identification - a New Entity Recognition Task (N19-2)

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Challenge: Named Entity Recognition (NER) is an important step in de-identification (de-ID) of medical records, many of which are recorded conversations between a patient and a doctor.
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Where do LLMs currently stand on biomedical NER in both clean and noisy settings ? (2026.findings-eacl)

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Challenge: despite advances in medicine, many diseases remain without effective treatments . clinical meta-analysis is essential for drug discovery and clinical research .
Approach: They investigate the performance of large language models (LLMs) on biomedical NER tasks . findings suggest LLMs exhibit a notable degree of robustness to noise .
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CleanCoNLL: A Nearly Noise-Free Named Entity Recognition Dataset (2023.emnlp-main)

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Challenge: Existing models achieve F1-scores comparable to or exceed noise level in CoNLL-03 . current models have significant annotation errors, incompleteness, and inconsistencies in the data .
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Entity Decomposition with Filtering: A Zero-Shot Clinical Named Entity Recognition Framework (2025.naacl-long)

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Challenge: Recent studies have demonstrated that large language models (LLMs) can perform in named entity recognition tasks.
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Chinese Spoken Named Entity Recognition in Real-world Scenarios: Dataset and Approaches (2024.findings-acl)

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Challenge: Current Chinese Spoken NER datasets are laboratory-controlled and are limited in topics.
Approach: They propose to use Chinese Spoken NER datasets to extract entities from speech to help voice assistants better grasp the intent behind user's questions and instructions.
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Optimizing Entity Resolution in Voice Interfaces: An ASR-Aware Entity Reference Expansion Approach (2024.emnlp-industry)

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Challenge: Automatic Speech Recognition (ASR) errors in voice-based dialog systems pose significant impediments to downstream tasks.
Approach: They propose an automatic speech recognition (ASR) error-aware loss function to inject failed mentions and resolved entity names into the knowledge graph to enhance its awareness of unresolved mentions.
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Evaluating Open-Source ASR Systems: Performance Across Diverse Audio Conditions and Error Correction Methods (2025.coling-main)

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Challenge: Automated speech recognition (ASR) systems are able to transcribe spontaneous human conversations with high accuracy.
Approach: They evaluate the accuracy of open source automatic speech recognition systems across conversational speech datasets and explore the potential of ASR ensembling and post-ASR correction methods to improve transcription accuracy.
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Linguistically Informed Relation Extraction and Neural Architectures for Nested Named Entity Recognition in BioNLP-OST 2019 (D19-57)

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Challenge: Named Entity Recognition (NER) and Relation Extraction (RE) are essential tools in distilling knowledge from biomedical literature.
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The Medical Scribe: Corpus Development and Model Performance Analyses (2020.lrec-1)

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Challenge: Existing tools to assist in clinical note generation using audio of provider-patient encounters are lacking.
Approach: They develop an annotation scheme to extract relevant clinical concepts from audio of provider-patient encounters and train a state-of-the-art tagging model.
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