Challenge: Our best systems achieved 1st rank and scored 0.86 mAP and 0.58 macro average accuracy in Task-1 and Task-2 respectively.
Approach: They propose to use attention-based supervised neural topic model and SVM for retrieval and ranking of PubMed abstracts and to use BM25 and other relevance measures for re-ranking.
Outcome: The proposed system scored 0.86 mAP and 0.58 macro average accuracy in the RDoC Tasks of BioNLP-OST 2019 .

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RDoC Task at BioNLP-OST 2019 (D19-57)

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Challenge: BioNLP-OST is an international competition organized to facilitate development and sharing of computational tasks of biomedical text mining and solutions to them.
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Deep Relevance Ranking Using Enhanced Document-Query Interactions (D18-1)

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Challenge: Document relevance ranking is the task of ranking documents from a large collection using the query and the text of each document only.
Approach: They propose to use convolutional n-gram matching to inject rich context-sensitive encodings into their models, inspired by PACRR's convolution-based ngram matching features.
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Integration of Deep Learning and Traditional Machine Learning for Knowledge Extraction from Biomedical Literature (D19-57)

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Challenge: BB system is among the top two systems in five of all six subtasks . knowledge about microbial diversity is crucial for the study of microbiome and bacteria .
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Literature Retrieval for Precision Medicine with Neural Matching and Faceted Summarization (2020.findings-emnlp)

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Challenge: IR for precision medicine often involves looking for multiple pieces of evidence that characterize a patient case.
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EARA: Improving Biomedical Semantic Textual Similarity with Entity-Aligned Attention and Retrieval Augmentation (2023.findings-emnlp)

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Challenge: Existing methods to measure semantic similarity between biomedical texts are inefficient due to too many biomedically-related entities.
Approach: They propose an entity-aligned, attention-based and retrieval-augmented PLM that aligns the same type of fine-grained entity information in each sentence pair with an entity alignment matrix with an auxiliary loss.
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TAN-NTM: Topic Attention Networks for Neural Topic Modeling (2021.acl-long)

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Challenge: Topic models have been widely used to learn text representations and gain insight into document corpora.
Approach: They propose a framework which processes document as a sequence of tokens through a LSTM whose contextual outputs are attended in a topic-aware manner.
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Retrieving Support to Rank Answers in Open-Domain Question Answering (2025.emnlp-main)

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Challenge: a novel question answering architecture retrieves content relevant to the combined pair . previous work on automatic claim verification has shown hallucinations .
Approach: They propose a question-answer architecture that prioritizes supporting evidence . it retrieves paragraphs that directly substantiate the correctness of a with respect to q .
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Training a Ranking Function for Open-Domain Question Answering (N18-4)

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Challenge: Recent advances in machine reading have inspired researchers to combine Information Retrieval with machine reading to tackle open-domain QA.
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Biomedical relation extraction with pre-trained language representations and minimal task-specific architecture (D19-57)

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Challenge: Using a pre-trained BERT-Base model, we learn domain-specific language representations using biomedical text.
Approach: They propose a system that extends BERT, a state-of-the-art language model, which learns contextual language representations from a large unlabelled corpus.
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A Novel Perspective to Look At Attention: Bi-level Attention-based Explainable Topic Modeling for News Classification (2022.findings-acl)

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Challenge: Existing deep learning models have the attention mechanism to improve performance, but the inherent characteristics of deep learning model complexity and the flexibility of the attention structure make them difficult to explain.
Approach: They propose a two-tier attention architecture to decouple the complexity of explanation and the decision-making process by using large-scale news corpora.
Outcome: The proposed model can achieve competitive performance with state-of-the-art models and illustrates its appropriateness from an explainability perspective.

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