Marginal Likelihood Training of BiLSTM-CRF for Biomedical Named Entity Recognition from Disjoint Label Sets (D18-1)
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| Challenge: | Existing large labeled text datasets contain labels for multiple subsets of biomedical entity types, but it is rare to find large labeling datasets containing all desired entity types together. |
| Approach: | They propose a method for training a single CRF extractor from multiple datasets with disjoint or partially overlapping sets of entity types. |
| Outcome: | The proposed method improves NER F1 over training in isolation on biocreative V CDR, biocreativ VI ChemProt and MedMentions datasets. |
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